KmerMultiSet

constructor(sequence: NucSeq, kmerSize: Int = 21, bothStrands: Boolean = true, stepSize: Int = 1, keepMinOnly: Boolean = false)

Extracts the kmer count from a nucleotide sequence sequence. In general kmers from both strands should be extracted, unless strand specificity is really known. No kmers that include an ambiguous base pair will be included Using stepSize subsets of the kmers can be sampled


constructor(kmerSize: Int = 21, bothStrands: Boolean = true, stepSize: Int = 1, keepMinOnly: Boolean = false)