Chrom
data class ChromStats(val contig: String, val numRegionBPs: Int, val percentCov: Double, val percentId: Double)
This file holds methods used to process MAF Files with the intent of creating Wiggle or BED formatted files for IGV viewing
MAF file format is defined here: https://genome.ucsc.edu/FAQ/FAQformat.html#format5 Baoxing says The reverse-complemented query sequence is in the MAF file. SO we don't need to convert for those alignments that aligned on the reverse strand. That helps.
NOTE: these lines are NOT tab-delimited, but rather white-space delimited - per the spec: Words in a line are delimited by any white space.