BioKotlin/biokotlin.genome/SAMDataFrame

SAMDataFrame

interface SAMDataFrame

SAM or BAM file parsed into a dataframe with the CIGAR string summarized into counts

Inheritors

Properties

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abstract val flag: Int
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abstract val mapQ: Int
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abstract val NM: Int
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abstract val numD: Int
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abstract val numEQ: Int
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abstract val numH: Int
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abstract val numI: Int
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abstract val numM: Int
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abstract val numS: Int
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abstract val numX: Int
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abstract val queryLength: Int
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abstract val queryName: String
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abstract val sequence: String
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abstract val strand: String
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abstract val targetEnd: Int
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abstract val targetName: String
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abstract val targetStart: Int