BioKotlin/biokotlin.genome/findGaps

findGaps

fun findGaps(target: List<MAFRecord>, source: List<MAFRecord>): List<Range<Int>>?

Method takes 2 lists of Maf Records, returns the gaps indicating which positions appear in the source that are not in the target. The calling method then augments the target with sequence from the gaps indicated by the findGaps method.