Distance
data class DistanceMatrices(val seqIDs: List<String>, val h1Count: DistanceMatrix, val hManyCount: DistanceMatrix, val copyNumberCount: DistanceMatrix, val copyNumberDifference: DistanceMatrix)
Set of distance matrices for samples seqIDs using the following distance measures (all normalized by average length of the sequences). h1Count: Number of kmers that have a max Hamming distance value of 1 hManyCount: Number of kmers that have a max Hamming distance value of 2 or more copyNumberCount: Number of shared kmers that have different copy numbers between the two sequences copyNumberDifference: Of the kmers that appear in both sequences, the total difference in copy number
Constructors
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constructor(seqIDs: List<String>, h1Count: DistanceMatrix, hManyCount: DistanceMatrix, copyNumberCount: DistanceMatrix, copyNumberDifference: DistanceMatrix)