BioKotlin/biokotlin.seq/Seq

Seq

interface Seq

Basic data structure for biological sequences - Nucleotide or Protein

Inheritors

Functions

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abstract operator fun compareTo(other: Seq): Int
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abstract fun copyOfBytes(): ByteArray
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abstract fun repr(): String

Returns (truncated) representation of the sequence for debugging

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abstract fun seq(): String
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abstract fun size(): Int

Returns the length of the sequence

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abstract override fun toString(): String

Return the full sequence as string

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abstract fun ungap(): Seq

TODO - needs to be implemented