BioKotlin/biokotlin.util/MergeGVCFUtils

MergeGVCFUtils

object MergeGVCFUtils

Merges GVCF files into a single VCF file. The GVCF files should have only one sample each. If a bedfile is provided, then the output VCF file is split into multiple files based on the ranges in the bedfile.

Functions

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fun mergeGVCFs(inputDir: String, outputFile: String, bedFile: String? = null)
fun mergeGVCFs(inputFiles: List<String>, outputFile: String, bedFile: String? = null)