BioKotlin/biokotlin.featureTree/Genome/Companion

Companion

object Companion

PLANNED:

  1. map

  2. appended

  3. filtered

  4. write

  5. writeBED

Functions

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fun fromFile(path: String, textCorrecter: (String) -> String? = null, parentResolver: ParentResolver? = null, multipleParentage: Boolean = false, modifySchema: TypeSchema.() -> Unit? = null): Genome

Creates immutable representation of a GFF file. Note that discontinuous features (those that have the same ID but are represented on different rows) will be merged into a single Feature object with several ranges. The discontinuous features must agree on all fields except start, end, phase, and attributes (only the attributes of the first occurrence of the ID will be preserved).