get
fun getCoverageIdentityPercentForMAF(mafFile: String, region: String = "all"): DataFrame<ChromStats>?
The getCoverageIdentityPercentForMAF takes a single UCSC MAF formatted file and for each contig represented, calculates the coverage and identity percentages as relates to the REF aligned against.
Currently, all MAF positions are processed. This could in the future be amended to process a user defined range of positions.
It returns a Krangle DataFrame of Contig, PercentCoverage, PercentIdentity