BioKotlin/biokotlin.seqIO/FastqIO

FastqIO

class FastqIO(val filename: String) : SequenceIterator

FastqIO implements a SequenceIterator for a FASTQ file at path filename

Attributes:

filename - File path of FASTQ file being parsed

@throws IllegalArgumentException if the FASTQ file is formatted incorrectly and cannot be parsed. @throws IllegalStateException if one of the sequences is not a valid []NUCSeq].

Constructors

constructor(filename: String)

Types

object Companion

Properties

val filename: String

Functions

forEachRemaining

open fun forEachRemaining(p0: Consumer<in SeqRecord>)

open operator override fun hasNext(): Boolean

open operator override fun next(): SeqRecord

open override fun read(): SeqRecord?

open override fun readAll(): Map<String, SeqRecord>